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This issue is to collect all steps to implement pipeline level nf-tests to nf-core pipelines
- Add pipeline level nf-test documentation website#2536
- Add pipeline level nf-tests for template #2992
- Add nf-test to pipeline template CI workflow #2881
- Add linting for pipeline nf-tests (included in Add pipeline level nf-tests for template #2992)
- Add an option to opt-out nf-tests when creating a custom (non nf-core) pipeline
- Make sure that all references to old tests are updated (i.e. running pipeline tests with
nextflow run) website#3380 - Lint for pipeline nf-test contents #3065
- Lint for tests/nextflow.config contents #3064
- Lint contents of nf-test.config #3063
- linting for nf-test snapshot #3049
- Adopt nf-test sharding #3243
- Tools pipeline tests use nf-test #3497 General: Update CI to test template pipelines with nf-test #3559
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