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[automated] Update CHANGELOG.md
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CHANGELOG.md

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- Update gitpod/workspace-base Docker digest to 77021d8 ([#3649](https://github.com/nf-core/tools/pull/3649))
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- Update pre-commit hook astral-sh/ruff-pre-commit to v0.12.1 ([#3648](https://github.com/nf-core/tools/pull/3648))
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- Update error message for rocrate_readme_sync ([#3652](https://github.com/nf-core/tools/pull/3652))
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- Fix tests after meta.yml restructuring ([#3659](https://github.com/nf-core/tools/pull/3659))
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## [v3.3.1 - Tungsten Tamarin Patch](https://github.com/nf-core/tools/releases/tag/3.3.1) - [2025-06-02]
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