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Pull requests list

Add deepsomatic tool
#1647 opened Sep 10, 2024 by vaxyzek Loading…
11 tasks
8 ❤️ 1
build: Set process arch for arm64
#1888 opened May 6, 2025 by edmundmiller • Draft
@edmundmiller
2 ❤️ 1
Allow existing GenomicsDb as input to incrementally update
#1116 opened Jun 18, 2023 by FriederikeHanssen • Draft
10 tasks
12
implementation of goleft/indexcov
#1312 opened Nov 3, 2023 by lindenb Loading…
1 of 9 tasks
10
switch to using --write-index instead of samtools index
#1338 opened Nov 23, 2023 by FriederikeHanssen • Draft
4 tasks
3
Enable multiple ploidy values for controlfreec
#980 opened Mar 28, 2023 by FriederikeHanssen • Draft
9 tasks
1
11
Sambamba
#1368 opened Dec 29, 2023 by stavgrossfeld • Draft
10 tasks
2
FEAT: remove old profile tests that are not used anymore in CI
#2084 opened Dec 17, 2025 by maxulysse Loading…
11 tasks
8
TMB
#616 opened Jul 4, 2022 by FriederikeHanssen Loading…
8
Replace DRAGMAP with NARFMAP
#1358 opened Dec 18, 2023 by edmundmiller • Draft
@edmundmiller
6
Add files via upload - Posters using Sarek
#1773 opened Jan 15, 2025 by mlfalco-bioinfo Loading…
11 tasks
1
Split variantannotation in its own pipeline and import it
#1561 opened Jun 11, 2024 by maxulysse Loading…
11 tasks
7
WIP: transfer mutect2 SBWFs to modules repo
#1147 opened Jul 8, 2023 by maxulysse • Draft
2
Try to simplify params.tools usage
#1667 opened Sep 30, 2024 by maxulysse Loading…
11 tasks
1
add_dysgu_sarek
#1590 opened Jul 11, 2024 by poddarharsh15 Loading…
11 tasks
14
[DRAFT] Add telseq "a software that estimates telomere length "
#1665 opened Sep 26, 2024 by lindenb Loading…
6 of 11 tasks
Add full test report
#1701 opened Oct 28, 2024 by edmundmiller • Draft
11 tasks
1
@maxulysse @edmundmiller
2
WIP: Add sentieon tnseq sentieon
#1497 opened May 3, 2024 by SPPearce • Draft
1
vardictjava variant calling workflow
#1582 opened Jul 3, 2024 by eolaniru Loading…
11 tasks
14
WIP Internal Benchmarking
#1721 opened Nov 1, 2024 by famosab • Draft
11 tasks
7
FEAT: Auto CHANGELOG GHA
#1688 opened Oct 14, 2024 by maxulysse • Draft
2
update cnvkit to reflect bug fixes blocked
#2051 opened Nov 11, 2025 by bounlu Loading…
3
feat: Add linting of FASTQ with FQ/LINT
#1763 opened Dec 17, 2024 by adamrtalbot Loading…
11 tasks
3.7
6
Output syntax Migration
#2066 opened Dec 3, 2025 by edmundmiller • Draft
11 tasks
@edmundmiller
2
Refactor to adhere to language server
#1912 opened May 30, 2025 by FriederikeHanssen • Draft
11 tasks
5
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