Description of the bug

I ran the pipeline on new Molecular Cartography data with Mindagap preapplied so I skipped mindagap, spot2cell didn't return the matched cells with transcripts.

Input table was a tab separated txt file that had 8 columns (without header) specifying the x,y,z,gene,tile_x,tile_y,slide,tile_id.

Command used and terminal output

Relevant files

No response

System information

No response