Description of the bug
Hi,
I'm running into this error:
20:08:02.464 [ERROR] thread exception: java.lang.NullPointerException: Cannot read field "CopyNumber" because "cnStartPrevData" is null
I'm running oncoanalyser v2.2.0 with a single tumor sample. Using as parameters:
mode: 'wgts'
genome: 'GRCh37_hmf'
Any ideas of what could be wrong?
Thanks in advance for the help!
Command used and terminal output
nextflow \
-log $workdir/nextflow_to_small_v2.2.0.log \
-config $maindir/oncoanalyser/nextflow_config_v2.2.0_nextflow.yaml \
run nf-core/oncoanalyser \
-r 2.2.0 \
-work-dir $workdir/work_small_nextflow \
-resume \
-profile singularity \
-params-file $workdir/params_file_v2.2.0_small.yaml
Relevant files
No response
System information
Nextflow version 25.04.8 build 5956
HPC
Slurm
Singularity
Linux
Oncoanalyser version 2.2.0