Hi there!

This is an exception that you might want to catch: the experiment of the client failed and we don't see much of an enrichment, and hence no peaks are found at all. Your pipeline crashes with "Error executing process > 'PeakQC'" (plot_macs_qc.r, plot_homer_annotatepeaks.r, cat peak_annotation_header.txt macs_annotatePeaks.summary.txt > macs_annotatePeaks.summary_mqc.tsv)

  Error in read.table(PeakFiles[idx], sep = "\t", header = FALSE) :
    no lines available in input
  Execution halted

Would you be able to fix this so that the pipeline can finish off even if no peaks are found?

Best wishes
Katrin