Reference-guided transcript discovery and quantification for long read RNA-Seq data

NeoDisc - A computational pipeline for the identification and prioritization of immunogenic tumor-specific HLA-I and -II antigens from genomics and transcriptomics and MS-based immunopeptidomics

Somatic structural variant caller for long-read data

R code to load and compare SVs and SCNAs from SAVANA manuscript

Search for activating regulatory variants in the tumor genome

Call select base modifications in PacBio HiFi reads

A phase-aware pharmacogenomic diplotyper for PacBio datasets

A comprehensive toolkit for single-cell methylation sequencing data analysis

Python package with CLI for the analysis of single cell methylation data.

Genetic Algorithm, Particle Swarm Optimization, Simulated Annealing, Ant Colony Optimization Algorithm,Immune Algorithm, Artificial Fish Swarm Algorithm, Differential Evolution and TSP(Traveling sa…

Blind&Invisible Watermark ，图片盲水印，提取水印无须原图！

MECAT: an ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads

single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single molecule resolution.

Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly

Palettes and Themes Inspired by Chinese Traditional Colors

SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence

Matrix eQTL: Ultra fast eQTL analysis via large matrix operations

A curated list of LLM powered AI Agents in Biomedical Research. Medical Image Analysis, Multi-omics Genomics Analysis, Biomedical Scientific Discoveries...

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Pangenome-based genome inference

AlphaGo Moment for Model Architecture Discovery.

PAMS是为基层细菌实验室管理日常监测菌株与基因组的一个客户端工具

Updated figures for "A benchmarking of WGS-based structural variant callers" paper

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Notes and studies about single-cell RNA-Seq analysis