Stars
Typer, build great CLIs. Easy to code. Based on Python type hints.
GitHub Copilot CLI brings the power of Copilot coding agent directly to your terminal.
A fast, distributed, high performance gradient boosting (GBT, GBDT, GBRT, GBM or MART) framework based on decision tree algorithms, used for ranking, classification and many other machine learning …
De novo clustering of long transcript reads into genes
Predict 3D genome structure from Fiber-seq data.
Python tool for converting files and office documents to Markdown.
Tongyi Deep Research, the Leading Open-source Deep Research Agent
Lightweight coding agent that runs in your terminal
The code for gene set analysis by accessing domain databases
12 Lessons to Get Started Building AI Agents
Agent framework and applications built upon Qwen>=3.0, featuring Function Calling, MCP, Code Interpreter, RAG, Chrome extension, etc.
deep learning-inspired explainable sequence model for transcription initiation
A lightweight, powerful framework for multi-agent workflows
Transforms complex documents like PDFs into LLM-ready markdown/JSON for your Agentic workflows.
TradingAgents: Multi-Agents LLM Financial Trading Framework
This API provides programmatic access to the AlphaGenome model developed by Google DeepMind.
Call select base modifications in PacBio HiFi reads
Biomni: a general-purpose biomedical AI agent
SWE-agent takes a GitHub issue and tries to automatically fix it, using your LM of choice. It can also be employed for offensive cybersecurity or competitive coding challenges. [NeurIPS 2024]
tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
Python packaging and dependency management made easy
The Open-Source Multimodal AI Agent Stack: Connecting Cutting-Edge AI Models and Agent Infra
Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifically designed for long-sequence data, such as RNA.
User-friendly Desktop Client App for AI Models/LLMs (GPT, Claude, Gemini, Ollama...)
python package for analysis of epigenetic long read sequencing assays, built using nanoporetech::modkit as a backend
A simulator of controlled transcript novelty for lrRNA-seq benchmark