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modules Public
Forked from nf-core/modulesRepository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow MIT License UpdatedNov 10, 2025 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedNov 3, 2025 -
BamTable_docker Public
A docker container for: BamTable - basic filtering for bam files.
Dockerfile UpdatedSep 23, 2025 -
test-datasets Public
Forked from nf-core/test-datasetsTest data to be used for automated testing with the nf-core pipelines
MIT License UpdatedSep 19, 2025 -
minotaur-recipes Public
Forked from poseidon-framework/minotaur-recipesPackage recipes for processing through the Minotaur workflow
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nft-utils Public
Forked from nf-core/nft-utilsnf-test utility functions
Java MIT License UpdatedJun 30, 2025 -
AdmixturePlotter Public
An R script to generate plots for ADMIXTURE runs, for multiple K values.
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sidora.core Public
Forked from sidora-tools/sidora.coreBackend for all sidora applications
R Other UpdatedDec 15, 2024 -
contammix_pipeline Public
a nextflow pipeline to run Contammix and all the necessary preprocessing for it.
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community-archive Public
Forked from Helsinki-Ronan/community-archiveThe Poseidon Community Archive (PCA)
UpdatedAug 15, 2024 -
intro-to-ancient-metagenomics-book Public
Forked from SPAAM-community/intro-to-ancient-metagenomics-bookIntroduction to Ancient Metagenomics Book
HTML Creative Commons Attribution 4.0 International UpdatedAug 1, 2024 -
staged-recipes Public
Forked from conda-forge/staged-recipesA place to submit conda recipes before they become fully fledged conda-forge feedstocks
Python BSD 3-Clause "New" or "Revised" License UpdatedJul 17, 2024 -
ena_scripts Public
Scripts to assist with data upload to the ena
Python MIT License UpdatedJul 16, 2024 -
nf_core_configs Public
Forked from nf-core/configsConfig files used to define parameters specific to compute environments at different Institutions
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comp_human_adna_book Public
Forked from MPI-EVA-Archaeogenetics/comp_human_adna_bookThis book summarises prepared mini-courses for various computational tools and methods in the field of human archaeogenetic data analysis, with a particular emphasis on population genetics.
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emu Public
Forked from Rosemeis/emuEM-PCA for Ultra-low Coverage Sequencing Data
Python GNU General Public License v3.0 UpdatedJun 4, 2024 -
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paasta-community.github.io Public
Forked from PAASTA-community/paasta-community.github.ioWebsite for the PAASTA Community
SCSS Other UpdatedMay 8, 2024 -
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MultiQC Public
Forked from MultiQC/MultiQCAggregate results from bioinformatics analyses across many samples into a single report.
Python GNU General Public License v3.0 UpdatedAug 28, 2023 -
ContaminateGenotypes Public
A simple python script to contaminate Eigenstrat genotypes.
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MultiQC_TestData Public
Forked from MultiQC/test-dataTest data for MultiQC. See https://github.com/ewels/MultiQC
HTML MIT License UpdatedAug 21, 2023 -
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eagerR Public
An R package to assist in reading of nf-core/eager results into R objects.
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Sex.DetERRmine Public
A python script to calculate the relative coverage of X and Y chromosomes, and their associated error bars, from the depth of coverage at specified SNPs.
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EigenStratDatabaseTools Public
A set of tools to compare and manipulate the contents of EingenStrat databases, and to calculate SNP coverage statistics in such databases.
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contamMix Public
Forked from plfjohnson/contamMixContamination estimation from mitochondrial ancient DNA
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