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  • UKCloud-transfer-StratMedPAED Public

    This repository contains the scripts necessary for the automated UKCloud transfer (sharing of NGS data for StratMed PAED project). The NGS data is generated by the Molecular Diagnostics Information…

    Python Updated Jul 28, 2022

  • StrucVar_vcf2report Public

    Script to generate a filtered tab delimited structural variant (SV) report from VCF output generated by Manta and/or Pindel.

    Python Updated Sep 11, 2021

  • Data_Scrape Public

    A project started after my bike was stolen and I was looking to buy a new one. The project was set up to notify me when my bike of interest was found on Wheelies website during the Covid 19 lockdow…

    Python Updated Jul 3, 2020

  • rnaseq Public

    Forked from nf-core/rnaseq

    RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control

    Nextflow MIT License Updated Mar 24, 2020

  • configs Public

    Forked from nf-core/configs

    Config files used to define parameters specific to compute environments at different Institutions

    Nextflow MIT License Updated Mar 23, 2020

  • rnafusion Public

    Forked from nf-core/rnafusion

    RNA-seq analysis pipeline for detection gene-fusions

    Nextflow MIT License Updated Feb 20, 2020