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Commits on Sep 18, 2025

• updated readme

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Commits on May 31, 2024

• Merge pull request #1 from RENCI/add-directionality-analysis

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• updated default input parameters in train.py

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• updated default output file parameter in infer.py

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• updated requirements.txt

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• added PDP and SHAP analysis

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Commits on Dec 14, 2023

• updated comments and readme

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• added requirements.txt for environment setup

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Commits on Nov 17, 2023

• updated readme

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• move analysis data and plots into results subfolder

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• reorganize code directories

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Commits on Oct 17, 2023

• added inference code

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Commits on Oct 12, 2023

• added more analysis

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Commits on Oct 11, 2023

• added multilabel classifiers

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• added model roc plots for ecDNA classification

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Commits on Oct 10, 2023

• added roc curve

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Commits on Oct 5, 2023

• updated evaluate.py

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Commits on Oct 4, 2023

• added data processing and training scripts for updated data

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Commits on Sep 9, 2023

• updated code to address Liz's questions

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Commits on Sep 8, 2023

• added other classifier model training and evaluation

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Commits on Sep 7, 2023

• added decision tree training and evaluation

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Commits on Aug 31, 2023

• intermediate work to add missing data imputation

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Commits on Aug 25, 2023

• added more data analysis and feature engineering scripts

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• added more data processing scripts

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Commits on Aug 16, 2023

• removed all rows with target column being null

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Commits on Aug 11, 2023

• updated gitignore and readme

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• Merge branch 'main' of https://github.com/RENCI/ecDNA into main

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• Initial commit

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• first pass of data processing

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