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Plotting scripts for long read sequencing data
A Python-based EGA download client
Transposon detection in Oxford Nanopore Sequencing data
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Exploring the emergence of matter, time, and consciousness from string theory and wave-based dynamics.
Transposable element expression at unique loci in single cells with CELLO-seq
Materials and scripts for 6mA evolution project
Using long read RNAseq to catch the alternative Polyadenylation sites and monitor the lengthening or shortening trend of 3'UTRs
Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
A pipeline to detect chimeric transcripts derived from genes and transposable elements.
A developed pipeline for Transposable element analysis.
Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch
R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
This is the alpha version of the CellOracle package
Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.
A repository containing guides, gene expression data, and scripts for a GWAS workshop.
A Shiny web app for mapping datasets using Seurat v4
graph-based cell type annotation toolkit for single-cell RNA-seq, ATAC-seq, and spatial omics
classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
github code repository for the Nature Communication 2025
Whole-Genome Inherited Bisulphite Sequencing Data Simulation
A topic-centric list of HQ open datasets.
Quantification of transposable element expression using RNA-seq
Biomni: a general-purpose biomedical AI agent