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A comprehensive codebase for training and finetuning Image <> Latent models.

Python 47 2 Updated Mar 1, 2025

The repository provides code for running inference and finetuning with the Meta Segment Anything Model 3 (SAM 3), links for downloading the trained model checkpoints, and example notebooks that sho…

Python 4,694 428 Updated Nov 25, 2025

A Transparent Generalist Model towards Holistic Medical Vision-Language Understanding

Python 497 18 Updated Nov 28, 2025

[ICML'25] EQ-VAE: Equivariance Regularized Latent Space for Improved Generative Image Modeling.

Python 162 7 Updated Jun 26, 2025

Official pytorch implementation of "AlphaFlow: Understanding and Improving MeanFlow Models"

Python 62 2 Updated Oct 24, 2025

A markup-based typesetting system that is powerful and easy to learn.

Rust 48,701 1,333 Updated Nov 28, 2025

Partial Volume Correction in PET

C++ 64 18 Updated Dec 10, 2024

Tools for white matter hyperintensity segmentation

C++ 4 Updated Sep 29, 2025

Toy implementation simplified consistency models using the TrigFlow formulation.

Jupyter Notebook 2 Updated Nov 4, 2025

PETPrep: A Robust Preprocessing Pipeline for PET Data

Jupyter Notebook 17 13 Updated Nov 28, 2025

Generalised Flow Maps official implementation.

Python 14 1 Updated Oct 30, 2025
Python 117 21 Updated Oct 7, 2025

Official implementation of "SynthBA: Reliable Brain Age Estimation Across Multiple MRI Sequences and Resolutions".

Python 16 1 Updated Oct 27, 2025

A tiny CPU simulator written in Python

Python 948 19 Updated Nov 12, 2025
Python 20 4 Updated Sep 1, 2025

Synthstrip integration to be used across nipreps

Python 14 3 Updated May 15, 2025

Repository of the paper "AnyUp: Universal Feature Upsampling".

Jupyter Notebook 405 23 Updated Nov 27, 2025
Python 14 2 Updated Oct 7, 2025

BM-MAE: Multimodal Masked Autoencoder Pre-training for 3D MRI-based Brain Tumor Analysis with Missing Modalities

Jupyter Notebook 25 3 Updated Aug 24, 2025

Merlin is a 3D VLM for computed tomography that leverages both structured electronic health records (EHR) and unstructured radiology reports for pretraining.

Python 163 14 Updated Oct 22, 2025

This is a PyTorch implementation of BrainMVP for mpMRI brain image analysis.

Python 61 6 Updated Sep 8, 2025

Code for MM-DINOv2: Adapting Foundation Models for Multi-Modal Medical Image Analysis (MICCAI2025)

Python 13 2 Updated Oct 27, 2025

Official PyTorch Implementation of "Diffusion Transformers with Representation Autoencoders"

Python 1,598 45 Updated Nov 15, 2025

Tools to automate simple manipulations and measurements of medical images and segmentations in nifti format.

Python 22 2 Updated May 19, 2025

Build reliable Gen AI solutions without overhead 🍕

Python 2,020 116 Updated Nov 28, 2025

DL tool for white matter hyperintensities segmentation

Python 19 7 Updated Sep 8, 2025
Python 163 12 Updated Oct 9, 2025

U-Bench: A Comprehensive Understanding of U-Net through 100-Variant Benchmarking

Python 144 16 Updated Nov 6, 2025

On-device TTS model by Neuphonic

Python 4,100 415 Updated Nov 18, 2025

[npj Digital Medicine] A generalizable 3D framework and model for self-supervised learning in medical imaging

Python 75 4 Updated Nov 7, 2025
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