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A simple tool to calculate metrics from a BAM file and filter references with uneven coverages

Python 18 6 Updated Oct 31, 2025

🗑️🦷 decOM 🦷🗑️

Python 5 2 Updated Nov 5, 2025

DisLinesNumber是一个PDF行号去除器

Python 3 Updated Mar 19, 2025

分享一些好用的 Dify DSL 工作流程,自用、学习两相宜。 Sharing some Dify workflows.

9,673 972 Updated Jun 11, 2025
Shell 1 Updated Jun 30, 2024

What should perfect bioinformatic tools be like?

142 1 Updated Nov 2, 2025

(Meta-)genome screening for functional and natural product gene sequences

Nextflow 96 34 Updated Nov 20, 2025
Julia 1 Updated Jul 3, 2025

🧹🦷 aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets

Python 6 2 Updated Mar 21, 2024

Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data

HTML 165 26 Updated Sep 4, 2025
Jupyter Notebook 3 Updated May 11, 2024

A collection of scripts pertaining to quality filtering, decontamination and aDNA authentication steps undertaken in Standeven et al. 2024

Shell 2 Updated Nov 5, 2025

ancient pathogen screening workflow

R 6 1 Updated Nov 18, 2025

Historical documents (in Chinese) about the GPCR (Thanks Comrade RC MR HR etc.)

HTML 1,426 401 Updated Nov 22, 2025

Screening of functional components and natural products from assembled contigs

Nextflow 1 Updated Oct 9, 2024

Coprolite host Identification pipeline

Nextflow 13 5 Updated Nov 20, 2025

R library to generate 'Cumulative Percent Decay' curves for microbial taxonomic profiles

R 4 Updated Sep 12, 2022

MantouAI—— 让Obsidian变身智能助手

TypeScript 91 9 Updated Feb 29, 2024

A workflow for the analysis of human nuclear DNA from sediments

Python 4 Updated Oct 1, 2025
HTML 9 7 Updated Feb 2, 2022

Ancient Metagenome Assembler For Heavily Damaged Datasets

C 11 2 Updated Oct 27, 2025

metaDMG-cpp

C++ 11 5 Updated Nov 19, 2025
HTML 1 Updated Oct 1, 2025

A pipeline to use metagenomic classifiers, in this case Kraken2, to filter raw sequence reads by taxonomic classification.

HTML 1 Updated May 20, 2025

中文 CSL 样式 - Zotero 中文社区

XML 5,871 897 Updated Nov 21, 2025

Set of scripts and data to analyse the genomic and metagenomic data from the Høier-Eriksen et al., 2024 paper

HTML 4 Updated Sep 12, 2024

PyTorch入门教程,在线阅读地址:https://datawhalechina.github.io/thorough-pytorch/

Jupyter Notebook 3,415 516 Updated Oct 31, 2025

《动手学深度学习》:面向中文读者、能运行、可讨论。中英文版被70多个国家的500多所大学用于教学。

Python 74,125 12,008 Updated Jul 30, 2024
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