HTSSRC not defined, assuming systemwide installation
echo "Only subset of analyses is being tested"
Only subset of analyses is being tested
cd test;./testAll.sh ../angsd /science/willerslev/scratch/thorfinn/angsd_merge/smallBam
--------------------
Using PRG: '../angsd' and BAMDIR: '/science/willerslev/scratch/thorfinn/angsd_merge/smallBam'
--------------------
Testing -sites
../angsd /science/willerslev/scratch/thorfinn/angsd_merge/smallBam

real	0m20.864s
user	0m17.445s
sys	0m2.626s
Testing vcfreading
../angsd /science/willerslev/scratch/thorfinn/angsd_merge/smallBam/small2.bcf

real	0m1.930s
user	0m1.119s
sys	0m0.050s

real	0m26.556s
user	1m47.064s
sys	0m0.875s
Testing basic mpileup
../angsd /science/willerslev/scratch/thorfinn/angsd_merge/smallBam

real	0m2.045s
user	0m1.967s
sys	0m0.140s
Testing association

real	0m0.570s
user	0m0.182s
sys	0m0.237s
Testing haplocall
../angsd

real	0m2.416s
user	0m2.305s
sys	0m0.041s
